🛠️ Reset and Clean Up DKN Nodes

Camilo Aponte

Camilo Aponte

Last updated on Sep 30, 2026

🔍 What Is the DKN and Why Might It Need a Reset?

Your Domain Knowledge Network (DKN) is the foundation Search Atlas uses to understand your website's topical structure. It maps your content into interconnected nodes — one per page or topic — to power recommendations across Content Genius and OTTO SEO.

Over time, your DKN may develop issues such as:

  • Duplicate or overlapping nodes — the same page is recognised as multiple distinct nodes.
  • Stale or poisoned keywords — node keywords carry over incorrect or mismatched data from earlier builds.
  • Corrupted titles — node titles contain disambiguation code that was not cleaned up automatically.
  • Mismatched data after a project switch — data from a previous project appears in a new project's DKN.

If your DKN contains any of these problems, resetting it and rebuilding from scratch is usually the fastest way to restore accurate topical mapping.

⚠️ Before You Reset: What to Know

Please read the following carefully before proceeding:

  • A full DKN reset is irreversible. All existing nodes, keyword assignments, and topical connections for the project will be permanently deleted.
  • After a reset, the DKN must be fully rebuilt. Rebuilding time depends on the size of your domain and the number of pages crawled.
  • Any Content Strategy work tied to existing nodes — such as briefs or cluster assignments — may be affected. Review your active content work before resetting.
  • Do not use the Sync with Brand Vault button on the Content Strategy page as a workaround for DKN issues. A known issue means this action can wipe DKN nodes without triggering a proper rebuild, leaving your network in an incomplete state.

🛠️ How to Request a Full DKN Reset

At this time, a full DKN reset must be performed by the Search Atlas support team. There is no self-serve reset button in the platform. Follow these steps to get it done quickly:

  1. Confirm which project needs the reset. Note the exact project name as it appears in Search Atlas.
  2. Decide whether you need a full reset (wipe everything and rebuild from scratch) or bulk deletion of specific duplicate nodes (partial cleanup). Both options are supported.
  3. Open the chat widget in the bottom-right corner of the platform and type human teammate to connect with the support team.
  4. Provide the following information:
    • Project name and URL
    • Whether you want a full reset or targeted node deletion
    • A brief description of the issue you are seeing (e.g., duplicate nodes, corrupted titles, stale data)
  5. The team will confirm the action with you before making any changes.

🔄 How to Rebuild Your DKN After a Reset

Once the reset is complete, follow these steps to rebuild a clean DKN:

  1. Go to your Project Settings and verify that the correct domain and crawl settings are configured.
  2. Trigger a new site crawl from the dashboard. This allows Search Atlas to rediscover your pages with fresh data.
  3. Navigate to the Content Strategy section and allow the DKN to regenerate automatically as the crawl completes.
  4. Once the DKN is rebuilt, review the new nodes to confirm they map correctly to your pages — look for any remaining duplicates or mismatched titles before resuming content work.

❓ Why Are Duplicate Nodes Being Created?

Duplicate nodes can appear when the system has difficulty determining whether a page already exists in the network. This can happen in several scenarios:

  • URL variations — the same page is accessible via multiple URLs (e.g., with and without a trailing slash, or HTTP vs HTTPS), causing the crawler to treat them as separate pages.
  • Crawl interruptions — a previous crawl did not complete cleanly, leaving partial node data that conflicts with a new crawl.
  • Disambiguation code leaks — a known bug caused internal code used to differentiate similar topics to appear in node titles and keywords. This issue has been patched, and a backfill was run to clean affected data. If you still see symbols or codes in your node titles, contact support for a targeted cleanup.

If you notice duplicates appearing shortly after a rebuild, check your canonical tags and redirect settings in your CMS before running another crawl. Fixing URL consistency at the source prevents the same issue from recurring.

✅ Quick Checklist Before and After a Reset

  • Note all active briefs and cluster assignments linked to existing nodes.
  • Confirm the correct project is selected before requesting a reset.
  • Do not use Sync with Brand Vault as a cleanup workaround.
  • After the reset, trigger a fresh crawl before reviewing new nodes.
  • Check canonical tags and redirects in your CMS to prevent duplicate nodes from reappearing.

💬 Still Need Help?

If you need further assistance, open the chat widget in the bottom-right corner of the platform and type human teammate to be connected with a member of our team.